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HUBbub 2013, Day 1 Morning Sessions
Series | 12 Sep 2013
HUBbub is the annual User Conference for researchers, educators, and IT professionals engaged in building and using cyberinfrastructure. Learn about the latest features in the HUBzero tool box and how they can be used to address the unique challenges of scientific pursuits. Hear from invited...
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A HUBzero Extension for Automated Tagging
Seminars | 11 Sep 2013 | Contributor(s): Jim Mullen
Tagging pages on a hub can help users find relevant content, but it also can require a lot of effort if done manually. We developed an extension for HUBzero that supports the automated tagging of content using the NCBO (National Center for Biomedical Ontology) Annotator; and we have installed...
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Adding Rappture to MATLAB Applications
Seminars | 21 Jun 2009 | Contributor(s): Michael McLennan
Rappture is the Rapid application infrastructure, a toolkit within the HUBzero platform that makes it easy to develop a graphical user interface for scientific modeling tools. MATLAB is a powerful commercial tool which supports simulation and modeling across a wide range of science and...
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Advanced Rappture Concepts
Seminars | 05 Apr 2010 | Contributor(s): Michael McLennan
Rappture is the Rapid APPlication infrastrucTURE, a toolkit within the HUBzero platform that makes it easy to develop a graphical user interface for scientific modeling tools.This talk picks up where "More Rappture Objects" left off, showing some of the more advanced constructs in Rappture. Use...
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Collaboration and Contributions
Seminars | 11 Sep 2013 | Contributor(s): Emily Kayser
This presentation will describe:- What hub groups are, and how to find or create them- How to invite and manage users in a group- Group manager functions- Group features that help facilitate group collaboration, including new calendar features- What resources are, and how they are contributed-...
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Collections
Seminars | 11 Sep 2013 | Contributor(s): Erich Huebner
This presentation will demo the HUBzero Collections component. Collections was designed as a “Pinterest” for research. Researchers and collaborators can now quickly add (or pin) a resource, wiki page, link, or almost any other page of the hub to their collection set. We will talk about creating a...
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Collections–Pinterest for Hubs. The STEMEdhub.org use of Collections
Seminars | 11 Sep 2013 | Contributor(s): Ann Bessenbacher
Unlike some hubs that are designed around one central concept, STEMEdhub.org was created under the general concept of STEM (Science, Technology, Engineering and Math) Education. STEMEdhub.org is designed as a set of smaller hubs set up as groups. With STEMEdhub.org based around the concept of...
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Configuring and Customizing
Seminars | 11 Sep 2013 | Contributor(s): Erich Huebner
Congratulations! Your HUBzero software is installed. Now what? Each new hub requires some configuration and customization based on your needs. We'll talk about content configuration (article pages), home page configuration (modules, news/announcements, banner), member registration customization...
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Courses Component
Seminars | 11 Sep 2013 | Contributor(s): Emily Kayser
This presentation will demo the HUBzero Courses component. It will describe features and functionality of this new component, including:- Course Builder – Uploading content (homework, lecture videos) and creating exams- Creating discussion posts- The differences between the Instructor and Student...
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Creating a Bibliography and Taxonomy within HUBzero: a HABRI Central Case Study
Seminars | 11 Sep 2013 | Contributor(s): Gretchen Stephens, Jane Yatcilla
In a landmark collaboration between the Purdue University College of Veterinary Medicine, the Purdue University Libraries, the Purdue University Press with funding from the HABRI (Human Animal Bond Research Initiative) Foundation, HABRI Central is being developed on the HUBzero platform to...
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Cyberinfrastructure for the Materials Genome Initiative
Seminars | 11 Sep 2013 | Contributor(s): Meredith Drosback
In June 2011 President Obama launched the Materials Genome Initiative (MGI), a multi-agency federal initiative designed to accelerate the discovery, manufacture, and deployment of advanced materials. The current materials R&D paradigm can take 20 years or more to move a new material from...
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Databases at the Hub: Now you can create them yourself!
Seminars | 18 Sep 2013 | Contributor(s): Ann Christine Catlin, Sudheera R. Fernando, Sumudinie Fernando, Ruchith Fernando, Ruwan J Egoda Gamage
There are more than thirty medical and scientific databases established across ten Hubs. All databases were created using our Hub-based “data technology” components, with interesting new features and capabilities added to the technology for each new project. We have customized these databases for...
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Developing hub tools that submit HPC jobs
Seminars | 11 Sep 2013 | Contributor(s): Rob Campbell
The HUBzero platform provides much support for tool development in addition to Rappture. Based on my experiences with writing the SubmiR tool for the DiaGrid.org hub, this presentation will focus on coding an application that imports data, submits an HPC job, and updates the user with job status....
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Developing Scientific Tools for the HUBzero Platform
Series | 20 Jun 2009 | Contributor(s): Michael McLennan
HUBzero serves up simulation tools online that you can access via an ordinary web browser. Where do the tools come from? From people like you, working throughout the world on research and educational activities, wanting to give others access to their modeling codes. Anyone can upload their own...
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DiaGrid + HUBzero: Power to the People
Seminars | 11 Sep 2013 | Contributor(s): Carol Song, Rob Campbell, Kevin chen, Steven Clark, Brian Raub, Christopher Thompson
DiaGrid is a distributed computing resource based on a federated HTCondor pool with more than 50,000 processor cores today and has delivered nearly 100 million computational jobs to date. A new HUBzero-based web front end to DiaGrid, diagrid.org (aka DiaGrid HUB), is now available for researchers...
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Disaster Recovery Test Report 2016
Downloads | 23 May 2017 | Contributor(s): Pascal Meunier
This is the report on the disaster recovery (Contingency Plan) test intended for 2016 but completed May 2017. It uses the form "CP TT-E After Action Report" for FISMA compliance with NIH.
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DMPTool: Expert Resources and Support for Data Management Planning
Seminars | 11 Sep 2013 | Contributor(s): Tao Zhang
A growing number of US federal funding agencies require data management plans (DMP) as part of new research grant proposals. One of the challenges facing institutions is providing a support structure for potential researcher knowledge gaps in the process. The DMPTool is a free, open source tool...
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Enabling computational modeling and geospatial data analysis through HUBzero
Seminars | 11 Sep 2013 | Contributor(s): Venkatesh Merwade, Lan Zhao, Carol Song
Water-HUB is developed as a collaborative platform for hydrology researchers, educators and policy makers. Currently, a commonly used hydrologic model called Soil Water Assessment Tool (SWAT) is used to link hydrologists through a SWATShare interface on Water-HUB. SWATShare enables any...
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Expedition Antioquia, a hub to promote richness and diversity for equity in Antioquia
Seminars | 11 Sep 2013 | Contributor(s): Juan Guillermo Lalinde, Juan Pineda, Leidy Lorena Alzate-Vargas (presenter)
Antioquia is one of Colombian departments (states) characterized by its richness, its diversity and, unfortunately, its inequity. Expedition Antioquia, is a research program involving more than 10 universities in the region, with the objective of become a hub for information about Antioquia and...
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GenomeHubs–Life Science Informatics & HPC
Seminars | 11 Sep 2013 | Contributor(s): Chris Dagdigian
Bioinformaticist-gone-bad Chris Dagdigian has spent the last 15 years as a high performance research IT specialist focusing on building, fixing, growing and optimizing IT systems designed to support & accelerate life science research. As a consultant, Chris gets to see how different organizations...