GenomeHubs–Life Science Informatics & HPC
Category
Published on
Abstract
Bioinformaticist-gone-bad Chris Dagdigian has spent the last 15 years as a high performance research IT specialist focusing on building, fixing, growing and optimizing IT systems designed to support & accelerate life science research. As a consultant, Chris gets to see how different organizations (Pharma, Biotech, Government, Academic and Non-profit) approach similar problems and he can relay war stories, trends, trips and tricks as seen directly from the trenches.
This session is intended as a general introduction to the life science informatics domain and will cover the application mix, common workflows and an overview of the most critical requirements and technology challenges facing life science researchers today. Hubs and Portals will be discussed along with a frank discussion of where the life science "sweet spots" are for leveraging platforms like HUBzero across public, private, government and nonprofit research organizations. A specific project involving the use of HUBzero within a US public health agency will also be covered.
Bio
Chris is an infrastructure geek & co-founder of the BioTeam – a specialist consulting firm occupying the niche between high performance computing, IT and discovery-oriented life science research. Chris has spent much of the last 15 years designing, building, fixing and improving research-focused HPC and IT systems for use in demanding production computing environments. He occasionally is known to blog, tweet and speak about industry trends and best practices.
Cite this work
Researchers should cite this work as follows:
Submitter
Nikki Huang
Purdue University
Tags
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1. GenomeHubs: Life Science Infor…
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2. Who I am
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3. BioTeam
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4. Disclaimer
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5. Why I am here
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6. Goal: "Talk Fast & Get Out Of …
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7. QUICK SPRINT: LIFE SCIENCE INF…
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8. Life Science Informatics
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9. The Cliche Example
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10. Meta Issue: It is a scary time…
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11. Big Picture / Meta Issue
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12. The Central Problem Is ...
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13. The Central Problem Is ...
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14. This is our new normal
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15. And a related problem ...
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16. If we get it wrong ...
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17. A few infrastructure pictures …
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18. The cliche image
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19. Lab local HPC & storage
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20. Small core w/ multiple NGS ins…
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21. Large Core Facility
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22. Large Core Facility: Just Stor…
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23. Regional Scientific Computing…
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24. Physical data movement station…
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25. Physical Ingest Repo & "Naked"…
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26. 30 of Amazon's largest nodes p…
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27. Basic Bio/IT Landscape
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28. Core Compute
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29. File & Data Types
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30. Application characteristics
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31. Storage & Data Management
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32. Storage & Data Management
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33. Data Movement & Data Sharing
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34. We Have Both Ingest Problems P…
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35. Physical Ingest Just Plain Nas…
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36. Huge Need For Network Ingest
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37. Cloud(s)
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38. Cloud Hubs & Portals
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39. Cloud Data Repositories
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40. It all boils down to this ...
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41. Life Science In One Slide
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42. HUBs for Life Science Informat…
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43. hubzero and one .gov
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44. hubzero and one .gov
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45. hubzero and one .gov
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46. Current Status
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47. Future Status
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48. Time permitting ...
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49. Time?
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50. My $.02: Internal Hubzero asse…
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51. My $.02: Internal Hubzero asse…
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52. My $.02: Internal Hubzero asse…
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53. War Stories
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54. One last thing ...
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55. One last thing ...
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56. One last thing ...
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57. end; Thanks!
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