HUBbub 2013, Day 1 Morning Sessions

12 Sep 2013 | Series

HUBbub is the annual User Conference for researchers, educators, and IT professionals engaged in building and using cyberinfrastructure. Learn about the latest features in the HUBzero tool box and how they can be used to address the unique challenges of scientific pursuits. Hear from invited...

2016 Annual Overview

08 Dec 2016 | Seminars | Contributor(s): Claire Stirm, Betsy A Hillery, Shawn Rice

Slides from the 2016 Annual Overview hosted by the Hubzero Team.

A HUBzero component for experimental knowledge management and data analytics

24 Jun 2016 | Seminars | Contributor(s): Elçin Içten (presenter)

A workflow based knowledge management system, KProMS, that functions as a HUBzero component has been developed at Purdue University. It captures the complete provenance of knowledge by modeling the details of the associated knowledge generation steps as workflows. Its unique workflow...

A HUBzero Extension for Automated Tagging

11 Sep 2013 | Seminars | Contributor(s): Jim Mullen

Tagging pages on a hub can help users find relevant content, but it also can require a lot of effort if done manually. We developed an extension for HUBzero that supports the automated tagging of content using the NCBO (National Center for Biomedical Ontology) Annotator; and we have installed...

A plugin for integration between moodle and hubzero using IMS LTI

24 Jun 2016 | Seminars | Contributor(s): Juan Pineda, Juan Guillermo Lalinde (presenter), Ruben Espinosa Roldan, Esteban Alarcón

IMS Learning Tools Interoperability (IMS LTI) is a standard specification that allows the integration of rich learning applications into learning environments. Its main goal is to enhance a transparent relationship between subsystems within a learning environment where the users could be...

An Integrated Collaborative Environment for Materials Research

24 Jun 2016 | Seminars | Contributor(s): Matthew D Jacobsen (presenter)

The dramatic rise in the volume, complexity, and utility of digital research data has triggered a need for scientific software systems that can manage this data across a laboratory enterprise. With no turnkey solutions available for this very difficult task, highly customizable and modular...

AWS 101: What is Amazon Web Services and how is Amazon's Cloud used in Science and Education

24 Jun 2016 | Seminars | Contributor(s): Steve Elliot (presenter)

Amazon Web Services is used by over 1 million customers and 4500 different academic institutions around the globe. AWS users leverage Amazon’s cloud for everything from mission critical space operations to launching new business and social apps or running large compute jobs across thousands...

Collaboration and Contributions

11 Sep 2013 | Seminars | Contributor(s): Emily Kayser

This presentation will describe:- What hub groups are, and how to find or create them- How to invite and manage users in a group- Group manager functions- Group features that help facilitate group collaboration, including new calendar features- What resources are, and how they are contributed-...

Collections

11 Sep 2013 | Seminars | Contributor(s): Erich Huebner

This presentation will demo the HUBzero Collections component. Collections was designed as a “Pinterest” for research. Researchers and collaborators can now quickly add (or pin) a resource, wiki page, link, or almost any other page of the hub to their collection set. We will talk about creating a...

Collections–Pinterest for Hubs. The STEMEdhub.org use of Collections

11 Sep 2013 | Seminars | Contributor(s): Ann Bessenbacher

Unlike some hubs that are designed around one central concept, STEMEdhub.org was created under the general concept of STEM (Science, Technology, Engineering and Math) Education. STEMEdhub.org is designed as a set of smaller hubs set up as groups. With STEMEdhub.org based around the concept of...

Complex Workloads on HUBzero – Pegasus Workflow Management System

24 Jun 2016 | Seminars | Contributor(s): Karan Vahi (presenter), Mats Rynge, Steven Clark, Ewa Deelman

The HUBzero platform for scientific collaboration enables tool developers to build tools that are easily shared with both researchers and educators. This enables users to login and start their analysis without worrying about setup and configuration of the tools. Once, the analysis is done...

Computational System Federation through a Common Service Bus

24 Jun 2016 | Seminars | Contributor(s): James Fourman, Matthew D Jacobsen, Kevin Porter, Claire Stirm

The Integrated Collaborative Environment (ICE) is a federated software framework that aims at connecting disparate systems for the purpose of enhanced productivity in the AFRL community. To meet demands for greater efficiency and better research, ICE acts as a common mediator between numerous...

Configuring and Customizing

11 Sep 2013 | Seminars | Contributor(s): Erich Huebner

Congratulations! Your HUBzero software is installed. Now what? Each new hub requires some configuration and customization based on your needs. We'll talk about content configuration (article pages), home page configuration (modules, news/announcements, banner), member registration customization...

Contributing to the Hubzero CMS via GitHUB

19 Jan 2017 | Teaching Materials | Contributor(s): Kevin Wojkovich, Claire Stirm

You will need to create a GitHUB account. They’re free and that’s all you need toget started.

Courses Component

11 Sep 2013 | Seminars | Contributor(s): Emily Kayser

This presentation will demo the HUBzero Courses component. It will describe features and functionality of this new component, including:- Course Builder – Uploading content (homework, lecture videos) and creating exams- Creating discussion posts- The differences between the Instructor and Student...

Creating a Bibliography and Taxonomy within HUBzero: a HABRI Central Case Study

11 Sep 2013 | Seminars | Contributor(s): Gretchen Stephens, Jane Yatcilla

In a landmark collaboration between the Purdue University College of Veterinary Medicine, the Purdue University Libraries, the Purdue University Press with funding from the HABRI (Human Animal Bond Research Initiative) Foundation, HABRI Central is being developed on the HUBzero platform to...

Cyberinfrastructure for the Materials Genome Initiative

11 Sep 2013 | Seminars | Contributor(s): Meredith Drosback

In June 2011 President Obama launched the Materials Genome Initiative (MGI), a multi-agency federal initiative designed to accelerate the discovery, manufacture, and deployment of advanced materials. The current materials R&D paradigm can take 20 years or more to move a new material from...

Data-driven Collaboration Environments: Integrating HUBZero and iRODS

24 Jun 2016 | Seminars | Contributor(s): Rajesh Kalyanam (presenter), Lan Zhao, Rob Campbell, Carol Song

As part of an effort to establish a community-based data sharing environment, we previously developed a HUBzero-based web component, iData. Using the open-source data management software, iRODS, iData provides hub users and tools with the ability to publish, manage, discover and consume data in a...

Databases at the Hub: Now you can create them yourself!

18 Sep 2013 | Seminars | Contributor(s): Ann Christine Catlin, Sudheera R. Fernando, Sumudinie Fernando, Ruchith Fernando, Ruwan J Egoda Gamage

There are more than thirty medical and scientific databases established across ten Hubs. All databases were created using our Hub-based “data technology” components, with interesting new features and capabilities added to the technology for each new project. We have customized these databases for...

Developing hub tools that submit HPC jobs

11 Sep 2013 | Seminars | Contributor(s): Rob Campbell

The HUBzero platform provides much support for tool development in addition to Rappture. Based on my experiences with writing the SubmiR tool for the DiaGrid.org hub, this presentation will focus on coding an application that imports data, submits an HPC job, and updates the user with job status....