Applications for Interactive Behavior Exploration

Seminars | 08 Apr 2011 | Contributor(s): Michael Zentner, Nathan Travis Denny, Gerhard Klimeck, George B. Adams III

Authors: Michael Zentner, Nathan Denny, Gerhard Klimeck, Ken Musselman, George Bunch Adams IIIIn the Spring of 2010 we became engaged with nanoHUB to help develop an understanding of the user activity on the site. After attempting several techniques for classifying user behaviors, it became...

Collaborative Research in a Regional Grid - Using HUBzero to Facilitate Collaboration

Seminars | 08 Apr 2011 | Contributor(s): Alisa Neeman, Steve Gallo

Alisa Neeman is a scientific programmer at University at Buffalo's Center for Computational Research (CCR). She works on the hpc2.org web portal, teaches, and helps students, researchers and industry clients use CCR's supercomputing resources. Prior to working for CCR, Dr. Neeman worked as a...

Research collaboration and knowledge sharing in the pharmaceutical domain

Seminars | 08 Apr 2011 | Contributor(s): Linas Mockus, Jose M Lainez, Rex Reklaitis, Ann Christine Catlin

Authors: Linas Mockus, Jose Lainez, Gintaras Reklaitis, Carl Wassgren, Kristine Alston, Ann CatlinNowadays, scientific collaborations are considerably growing and all forms of cyber-infrastructure are often used to tackle a single complex problem. To sustain and exploit this movement, the...

Opening Remarks

Seminars | 08 Apr 2011 | Contributor(s): Michael McLennan

This presentation forms part of the morning sessions at HUBbub 2011. These sessions covered topics ranging from plenary speakers discussing the future of cyberinfrastructure and research at public universities and tech talk discussions on HUBzero's new functionality and ways to enhance your...

cceHUB: An Environment for Collaborative Cancer Care Research

Seminars | 07 Apr 2011 | Contributor(s): Ann Christine Catlin

cceHUB supports collaboration and community resource sharing for Cancer Care Engineering, a research project that links clinical teams at IU Simon Cancer Center with science laboratories and statisticians at Purdue and Indiana Universities. The cceHUB environment encompasses major elements of the...

CatalyzeCare: Transforming Healthcare Delivery Through Communities

Seminars | 07 Apr 2011 | Contributor(s): Pamela L Morris, Amira Zamin

Authors: Pamela Morris, Amira ZaminThe purpose of CatalyzeCare is to provide a cyberinfrastructure for online collaboration that aims to improve and transform healthcare delivery. The site, funded by the Regenstrief Center for Healthcare Engineering, seeks to initially provide a free and open...

Indiana CTSI

Seminars | 07 Apr 2011 | Contributor(s): William K Barnett

The Indiana CTSI HUB represents a somewhat unique use case in HUBzero deployments. An institutional virtual organization, it represents an attempt to link Indiana University, Indiana University School of Medicine, Purdue University, and the University of Notre Dame in a statewide effort to...

Exposing HUB Objects for Aggregation Using OAI-ORE and Linked Data

Seminars | 07 Apr 2011 | Contributor(s): Michael Witt, Aswathy Sivaram

Authors: Michael Witt, Aswathy SivaramThe Open Archives Initiative Object Reuse and Exchange (ORE) defines a standard for the description and exchange of aggregations of Web resources. Work is currently underway to develop an OAI-ORE implementation for HUBzero as part of the Open Parks Grid,...

DRINET Hub for Drought Information Synthesis, Modeling and Applications

Seminars | 07 Apr 2011 | Contributor(s): Lan Zhao, Carol Song

Authors: Lan Zhao, Carol SongAn interdisciplinary team of researchers is building the DRINET hub to support regional scale drought information dissemination and synthesis, and sharing of datasets, models and tools in an NSF-funded data interoperability project. The DRINET project engages diverse...

Success Criteria for Establishing a Thriving HUBzero Based Site: A Model for Science 2.0

Seminars | 07 Apr 2011 | Contributor(s): Lynn Zentner, Gerhard Klimeck, Krishna P. C. Madhavan, George B. Adams III

Authors: Lynn Zentner, Gerhard Klimeck, Krishna P. C. Madhavan, George Bunch Adams IIIScience gateways utilizing HUBzero technology provide the means for rapid dissemination and use of research results by a global research and education community, extending resources that used to be available to...

Using HUBzero to Distribute and Enable Analysis of Deepwater Horizon Oil Spill Videos

Seminars | 07 Apr 2011 | Contributor(s): Steve Wereley, Kristina Bross, Derrick Kearney, Christopher A Smoak, Michael Zentner

Authors: Steve Wereley, Kristina Bross, Derrick Kearney, Christopher Smoak, Michael ZentnerLast summer the Gulf of Mexico was subject to the worst ever oil spill in US history. In order to plug the damaged well, a fleet of Remote Operated Vehicles (ROVs) was brought in. Each of these vehicles is...

HUBzero Roadmap and Community Feedback

Seminars | 07 Apr 2011 | Contributor(s): George B. Adams III, Michael McLennan

This presentation forms part of the morning sessions at HUBbub 2011. These sessions covered topics ranging from plenary speakers discussing the future of cyberinfrastructure and research at public universities and tech talk discussions on HUBzero's new functionality and ways to enhance your...

HUBcheck - Check the Hub

Seminars | 07 Apr 2011 | Contributor(s): Derrick Kearney

HUBcheck is a testing infrastructure developed to help identify incorrect setup and missing components of the HUBzero Platform. It supports test cases written in Tcl, Perl, and Python. In the future, other languages, like Ruby and Shell, will also be supported. Currently there are over 200...

Cyberinfrastructure for Regenerative Personalized Medicine: The Vision and Challenges

Seminars | 07 Apr 2011 | Contributor(s): Sangtae Kim

Successive waves of advances in the biological sciences: genomic, proteomics and systems biology, have brought us to an unprecedented level of understanding of multi-scale (molecular to cellular) processes in living systems. Regenerative medicine fits into this framework by connecting new...

Open Notebook Science: Does Transparency Work?

Seminars | 07 Apr 2011 | Contributor(s): Jean-Claude Bradley

This presentation will first describe Open Notebook Science, the practice of making the laboratory notebook and all associated raw data available to the public in real time. Examples of current applications in organic chemistry - solubility and chemical reactions - will be detailed. Key details...

Atlas of Science: Envisioning Scholarly Data

Seminars | 07 Apr 2011 | Contributor(s): Katy Borner

Cartographic maps have guided our explorations for centuries, allowing us to navigate the world. Science maps have the potential to guide our search for knowledge in the same way, allowing us to visualize scientific results. Science maps help us navigate, understand, and communicate the dynamic...

What Next for Public Research Universities?

Seminars | 07 Apr 2011 | Contributor(s): Tim Sands

The Morrill Act of 1862 outlined a framework for the creation of state public universities designed for the express purposes of promoting economic development through applied research and supporting our democracy by educating the citizenry. In the past three decades, the impact of these...

Cyberinfrastructure for HPC: High Performance Collaboration

Seminars | 07 Apr 2011 | Contributor(s): Daniel Atkins

This presentation forms part of the morning sessions at HUBbub 2011. These sessions covered topics ranging from plenary speakers discussing the future of cyberinfrastructure and research at public universities and tech talk discussions on HUBzero's new functionality and ways to enhance your...

Cyberinfrastructure for Computation and Data-enabled Science & Engineering

Seminars | 07 Apr 2011 | Contributor(s): Gabrielle Allen

This presentation forms part of the morning sessions at HUBbub 2011. These sessions covered topics ranging from plenary speakers discussing the future of cyberinfrastructure and research at public universities and tech talk discussions on HUBzero's new functionality and ways to enhance your...

Exploring the Impact of nanoHUB.org on Research and Education

Seminars | 07 Apr 2011 | Contributor(s): Gerhard Klimeck, George B. Adams III, Krishna P. C. Madhavan, Nathan Travis Denny, Michael Zentner, Swaroop S, Lynn Zentner, Diane L Beaudoin, Mehdi Salmani-Jelodar

Authors: Gerhard Klimeck, George B. Adams III, Krishna P. C. Madhavan, Nathan Denny, Michael G. Zentner, Swaroop Shivarajapura, Lynn K. Zentner, Diane L. Beaudoin, and Mehdi Salmani-Jelodar Network for Computational Nanotechnology, Purdue UniversityAs the first and largest HUB utilizing the...